本日も長いので全文は excerpt に。
[ Restructuring the SBML Processs (M.Hucka) ]
Version, Level に加えて Issue をつける?
Version: Major architectural change
Level: small modifications
Issue: result of acceptance of errata
[ Issues with SBML L2V2 (A.Finney) ]
SBML element の attribute として Issue をつける
About SBase:
Need to support multiples of
– note: difficult to merge html
– annotation: separating XML structures from different applications not easy
– definitionURL: more than one ‘is_a’ association
ううむ、annotation が複数とかになったら読むのしんどくないかな。あーあうー。
Annotation
– Keep but deprecate reserved namespaces for annotations
– not allowed to redefine default namespace for inside of annotation
– use single element for single namespace
– definitionURL -> definitionURI
Units
– nested units は必要? : やっぱ複雑なわりに意味ないんじゃね?
– definition attribute: SI単位系の built-in が同じ namespace を共有してますよ
Initial Assignment
Slow down?: モデルがプログラムみたいになっちゃうよな
– Be mathematical: no loops, order not significant
– Be mathematical but consistent with AssignmentRule: no loops, order significant
– as currently in spec.: loops are ok, order significant to the user but not to parser
Species
– deprecate charge attribute
Reactions
– Compartment independent reactions
Rules
– Variable on Algebraic Rule: previously ruled out!