しばらく忙しさにかまけてサボっていたのがバレバレ。
Pawan Dhar, Tan Chee Meng, Sandeep Somani, Li Ye, Anand Sairam, Mandar Chitre, Zhu Hao, and Kishore Sakharkar
Cellware—a multi-algorithmic software for computational systems biology
Bioinformatics Advance Access published on February 10, 2004
Bioinformatics 2004 20: 1319-1321; DOI: 10.1093/bioinformatics/bth067
*Application Note
J. A. Izaguirre, R. Chaturvedi, C. Huang, T. Cickovski, J. Coffland, G. Thomas, G. Forgacs, M. Alber, G. Hentschel, S. A. Newman, and J. A. Glazier
COMPUCELL, a multi-model framework for simulation of morphogenesis
Bioinformatics Advance Access published on February 5, 2004
Bioinformatics 2004 20: 1129-1137; DOI: 10.1093/bioinformatics/bth050
うむむ。これは難しい（とりあえず関係ないんだが面白そう）。
Justin Ebedes and Amitava Datta
Multiple sequence alignment in parallel on a workstation cluster
Bioinformatics Advance Access published on February 5, 2004
Bioinformatics 2004 20: 1193-1195; DOI: 10.1093/bioinformatics/bth055
* Application Note
Zheng Rong Yang and Kuo-Chen Chou
Bio-support vector machines for computational proteomics
Bioinformatics Advance Access published on January 29, 2004
Bioinformatics 2004 20: 735-741; DOI: 10.1093/bioinformatics/btg477
この vector machine というのは、ベクトル計算機ではないみたいだ。
とりあえずあんまり関係ないので、いいや。
Kouichi Takahashi, Kazunari Kaizu, Bin Hu, and Masaru Tomita
A multi-algorithm, multi-timescale method for cell simulation
Bioinformatics Advance Access published on January 22, 2004
Bioinformatics 2004 20: 538-546; DOI: 10.1093/bioinformatics/btg442
E-Cell3 に、Gillespie-Gibson なモジュールを載せてる。
Thomas R. Kiehl, Robert M. Mattheyses, and Melvin K. Simmons
Hybrid simulation of cellular behavior
Bioinformatics 2004 20: 316-322; DOI: 10.
1093/bioinformatics/btg409
Gillespie とかのを、解析モデルと併用する話。かなり面白い。
Reference の Press et.al, 2002 は要チェックな感じ。日吉の図書館にある。
Numerical recipes in C++ : the art of scientific computing