{"id":1734,"date":"2007-07-19T16:40:18","date_gmt":"2007-07-19T07:40:18","guid":{"rendered":"http:\/\/yasu2.prosou.nu\/blog\/index.php\/2007\/07\/19\/das\/"},"modified":"2007-07-19T16:40:18","modified_gmt":"2007-07-19T07:40:18","slug":"das","status":"publish","type":"post","link":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/2007\/07\/19\/1734\/","title":{"rendered":"DAS \u305d\u306e\u5f8c"},"content":{"rendered":"<p>DAS client \u3092\u672c\u6c17\u3067\u5b9f\u88c5\u3059\u308b\u3053\u3068\u306b\u3057\u3088\u3046\u3068\u601d\u3046\u4eca\u65e5\u3053\u306e\u9803\u3002<br \/>\nDSN \u306e\u30a2\u30c9\u30ec\u30b9:<br \/>\nUCSC: <a href=\"http:\/\/genome.cse.ucsc.edu\/cgi-bin\/das\/dsn\">http:\/\/genome.cse.ucsc.edu\/cgi-bin\/das\/dsn<\/a><br \/>\nEnsEMBL: <a href=\"http:\/\/www.ensembl.org\/das\/dsn\">http:\/\/www.ensembl.org\/das\/dsn<\/a><br \/>\nKEGG: <a href=\"http:\/\/das.hgc.jp\/cgi-bin\/das\/kegg\/dsn\">http:\/\/das.hgc.jp\/cgi-bin\/das\/kegg\/dsn<\/a><br \/>\nDSN entry \u306e\u3001MAPMASTER \u3067\u793a\u3055\u308c\u308b URL (\u305f\u3068\u3048\u3070 http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18) \u306e\u3046\u3057\u308d\u306b\u3001entry_points \u3092\u3064\u3051\u3066\u3084\u308b\u3068\u3001\u305d\u306e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u306e entry point \u304c\u51fa\u308b\u3002<br \/>\n<a href=\"http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/entry_points\">http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/entry_points<\/a> \u3068\u304b\u3002<br \/>\n\u540c\u69d8\u306b\u3001types \u3092\u3064\u3051\u3066\u3084\u308b\u3068\u3001\u305d\u306e\u30c7\u30fc\u30bf\u30d9\u30fc\u30b9\u304b\u3089\u624b\u306b\u5165\u308b\u30c7\u30fc\u30bf\u30bf\u30a4\u30d7\u306e\u30ea\u30b9\u30c8\u304c\u624b\u306b\u5165\u308b\u3002<br \/>\n<a href=\"http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/types\">http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/types<\/a>\u3068\u304b\u3002<br \/>\nentry point \u306b\u306f segment (\u3064\u307e\u308a\u3001\u67d3\u8272\u4f53\u3068\u304b) \u306e id \u306e\u30ea\u30b9\u30c8\u304c\u8f09\u3063\u3066\u3044\u308b\u304b\u3089\u3001<br \/>\n<a href=\"http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/features?segment=1:1,5000\">http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/features?segment=1:1,5000<\/a><br \/>\n\u307f\u305f\u3044\u306b\u53e9\u3051\u3070\u30011\u756a\u67d3\u8272\u4f53\u306e 1-5000bp \u306e\u3068\u3053\u308d\u306e\u30c7\u30fc\u30bf\u304c\u304c\u3063\u3064\u308a\u53d6\u308c\u308b\u3002<br \/>\n\u307b\u304b\u306b\u3082\u3001<br \/>\n<a href=\"http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/features?segment=1:1,100000;type=knownGene\">http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/features?segment=1:1,100000;type=knownGene<\/a><br \/>\n\u7279\u5b9a\u306e type \u3060\u3051\u3092\u9078\u3093\u3060\u308a\u3001<br \/>\n<a href=\"http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/features?segment=1:1,100000;type=knownGene;type=refGene\">http:\/\/genome.cse.ucsc.edu:80\/cgi-bin\/das\/hg18\/features?segment=1:1,100000;type=knownGene;type=refGene<\/a><br \/>\n\u8907\u6570\u306etype\u3092\u9078\u3093\u3060\u308a\u3067\u304d\u308b\u3002<br \/>\nUCSC \u306e DAS \u306f human genome \u3068\u304b\u3060\u3068\u304b\u306a\u308a\u3088\u3055\u305d\u3046 (EnsEMBL \u306e\u30c7\u30fc\u30bf\u3082\u5165\u3063\u3066\u308b\u3057)\u3002<br \/>\nensGene(EnsEMBL gene), knownGene, refGene, mrna, ECGene (cDNA \u30d9\u30fc\u30b9\u306e\u4e88\u6e2c\u30c4\u30fc\u30eb\u306e\u7d50\u679c), geneid (ab initio \u306e\u4e88\u6e2c\u30c4\u30fc\u30eb\u306e\u7d50\u679c), genscan(ab initio \u306e\u4e88\u6e2c\u30c4\u30fc\u30eb\u306e\u7d50\u679c), nscanGene(\u6bd4\u8f03\u30b2\u30ce\u30e0\u30d9\u30fc\u30b9\u306e\u4e88\u6e2c\u30c4\u30fc\u30eb\u306e\u7d50\u679c) \u306a\u3069\u306e\u30c7\u30fc\u30bf\u304c\u4f7f\u3048\u305d\u3046\u3002Thanks to Hacchy!<\/p>\n","protected":false},"excerpt":{"rendered":"<p>DAS client \u3092\u672c\u6c17\u3067\u5b9f\u88c5\u3059\u308b\u3053\u3068\u306b\u3057\u3088\u3046\u3068\u601d\u3046\u4eca\u65e5\u3053\u306e\u9803\u3002 DSN \u306e\u30a2\u30c9\u30ec\u30b9: UCSC: http:\/\/genome.cse.ucsc.edu\/cgi-bin\/das\/dsn EnsEMBL: http:\/ &hellip; <a href=\"https:\/\/yasu2.prosou.nu\/blog\/index.php\/2007\/07\/19\/1734\/\" class=\"more-link\"><span class=\"screen-reader-text\">&#8220;DAS \u305d\u306e\u5f8c&#8221; \u306e<\/span>\u7d9a\u304d\u3092\u8aad\u3080<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":4,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[4],"tags":[],"class_list":["post-1734","post","type-post","status-publish","format-standard","hentry","category-4"],"_links":{"self":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts\/1734","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/comments?post=1734"}],"version-history":[{"count":0,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts\/1734\/revisions"}],"wp:attachment":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/media?parent=1734"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/categories?post=1734"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/tags?post=1734"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}