{"id":1456,"date":"2006-12-07T01:29:36","date_gmt":"2006-12-06T16:29:36","guid":{"rendered":"http:\/\/yasu2.prosou.nu\/blog\/index.php\/2006\/12\/07\/wsc_06\/"},"modified":"2006-12-07T01:29:36","modified_gmt":"2006-12-06T16:29:36","slug":"wsc_06","status":"publish","type":"post","link":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/2006\/12\/07\/1456\/","title":{"rendered":"WSC &#8217;06"},"content":{"rendered":"<p>[ Software Innovation in Systems Biology ]<br \/>\nHerbert M.Sauro.<br \/>\nCompuCell3D: lattice-based \u306a 3D \u30e2\u30c7\u30ea\u30f3\u30b0<br \/>\nWhat&#8217;s missing from Today&#8217;s simulation tools<br \/>\n&#8211; Automatic model reduction via time scale separation<br \/>\n&#8211; Model composition, ability to build models from small models.<br \/>\n&#8211; Assistance in choosing rate laws (rate law builders)<br \/>\n&#8211; Robust bifurcation analysis tools for large systems<br \/>\n&#8211; Interactive tools<br \/>\n[ Copasi tutorial ]<br \/>\nDeterministic \u3067\u306f LSODA \u3092\u4f7f\u3063\u3066\u308b (LSODA \u306f Adams \/ backward differentiation formula (BDF) \u3067\u3067\u304d\u3066\u308b)\u3002\u3042\u3068 4th RK.<br \/>\nStochastic \u3067\u306f NRM.<br \/>\nHybrid \u3082\u3042\u308b\u3093\u3060\u305c\u3002<br \/>\nMCA: elasticity = how reaction rates are changed by concentration change.<br \/>\nParameter scan<br \/>\n[ CellDesigner ]<br \/>\nreaction \/ specie \u3092 ontology \u306b binding \u3059\u308b\u306e\u306f\u3069\u3046\uff1f<br \/>\n\u3068\u304d\u304b\u308c\u3066\u307e\u3057\u305f\u3002<br \/>\n[ Virtual Cell ]<br \/>\nParameter space \u3092\u63a2\u7d22\u3059\u308b\u306e\u3067\u306f\u306a\u304f\u3066\u3001<br \/>\nmodel space exploration \u306f\u3069\u3046\u3060\u308d\u3046\uff1f\u3000\u3068\u304b\u3044\u3046 discussion \u304c\u3067\u3066\u305f\u3002<br \/>\n\u3064\u307e\u308a\u3001model \u304c given \u3067\u305d\u306e\u30d1\u30e9\u30e1\u30fc\u30bf\u3092\u30b9\u30ad\u30e3\u30f3\u3059\u308b\u306e\u3067\u306f\u306a\u304f\u3066\u3001<br \/>\nreaction \u3068\u304b\u305d\u3046\u3044\u3046\u3001model \u81ea\u4f53\u3092\u304b\u3048\u306a\u304c\u3089\u63a2\u7d22\u3059\u308b\u3063\u3066\u306e\u306f<br \/>\n\u3069\u3046\u306a\u306e\u304b\u306d\uff1f\u3068\u3002<br \/>\n\u304a\u3082\u3057\u308d\u305d\u3046\u3060\u3051\u3069\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>[ Software Innovation in Systems Biology ] Herbert M.Sauro. CompuCell3D: lattice-based \u306a 3D \u30e2\u30c7\u30ea\u30f3\u30b0 What&#8217;s &hellip; <a href=\"https:\/\/yasu2.prosou.nu\/blog\/index.php\/2006\/12\/07\/1456\/\" class=\"more-link\"><span class=\"screen-reader-text\">&#8220;WSC &#8217;06&#8221; \u306e<\/span>\u7d9a\u304d\u3092\u8aad\u3080<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":4,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[10],"tags":[],"class_list":["post-1456","post","type-post","status-publish","format-standard","hentry","category-conference-logs"],"_links":{"self":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts\/1456","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/comments?post=1456"}],"version-history":[{"count":0,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts\/1456\/revisions"}],"wp:attachment":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/media?parent=1456"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/categories?post=1456"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/tags?post=1456"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}