{"id":1096,"date":"2006-04-05T20:00:47","date_gmt":"2006-04-05T11:00:47","guid":{"rendered":"http:\/\/yasu2.prosou.nu\/blog\/index.php\/2006\/04\/05\/libsbml_layout_extension\/"},"modified":"2006-04-05T20:00:47","modified_gmt":"2006-04-05T11:00:47","slug":"libsbml_layout_extension","status":"publish","type":"post","link":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/2006\/04\/05\/1096\/","title":{"rendered":"libsbml + layout extension"},"content":{"rendered":"<p>libSBML \u3092\u4f7f\u3063\u3066\u3001\u3053\u3093\u306a\u611f\u3058\u2193\u306b\u4f5c\u3063\u305f\u30ec\u30a4\u30a2\u30a6\u30c8\u60c5\u5831\u3092\u524a\u9664\u3057\u305f\u3044\u3068\u601d\u3063\u305f\u3002<\/p>\n<pre>\nSBMLReader reader = new SBMLReader();\nSBMLDocument document = reader.readSBMLFromString(sbml);\nModel model = document.getModel();\nLayout layout = model.createLayout();\n<\/pre>\n<p>\u3067\u3001<\/p>\n<pre>\nlayout.delete();\n<\/pre>\n<p>\u3068\u304b\u66f8\u3044\u3066\u307f\u305f\u306e\u3060\u304c\u3001\u5168\u7136\u6d88\u3048\u306a\u3044&#8230; (\u305f\u3060\u306e finalizer \u3060\u304b\u3089\u3060&#8230;) \u7d50\u8ad6\u3068\u3057\u3066\u306f\u3001<\/p>\n<pre>\nListOf listOfLayouts = model.getListOfLayouts();\nlong numLayouts = listOfLayouts.getNumItems();\nfor ( long i = numLayouts-1; i >= 0; i-- )  listOfLayouts.remove(i);\n<\/pre>\n<p>\u307f\u305f\u3044\u306b\u3059\u308c\u3070\u3088\u3044\u306e\u3067\u3059\u306a\u3002\u3075\u3064\u3046\u306b libSBML \u3092\u4f7f\u3063\u3066\u3001species \u3068\u304b reaction \u3068\u304b\u3092\u6d88\u3059\u5834\u5408\u3082\u3053\u3093\u306a\u611f\u3058\u306b\u3084\u308c\u3070\u3044\u3044\u307f\u305f\u3044\u3067\u3059\u3002\u3066\u3044\u3046\u304b\u3001\u30b5\u30f3\u30d7\u30eb\u306e\u30b3\u30fc\u30c9\u306b\u306f\u3001SBML \u306e\u3044\u308d\u3093\u306a element \u3092\u8ffd\u52a0\u3057\u3066\u3044\u3063\u3066\u4f5c\u308b\u5974\u306f\u3042\u308b\u3093\u3067\u3059\u304c\u3001\u6d88\u3059\u5974\u306f\u306a\u3044 (\u3068\u601d\u3046) \u3093\u3067\u3059\u306a&#8230;<\/p>\n<p>\n\u305d\u3086\u308f\u3051\u3067\u3001\u6210\u7530-\u30d5\u30e9\u30f3\u30af\u30d5\u30eb\u30c8\u7dda\u3067\u3072\u3068\u3064\u3081\u306e\u30d0\u30c3\u30c6\u30ea\u3092\u6d88\u5316\u3057\u3066\u3001\u7121\u4e8b\u306b\u4f5c\u696d\u304c\u7d42\u4e86\u3057\u305f\u306e\u3067\u3057\u305f\u3002\u3046\u3072\u3087\u30fc\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>SBMLReader reader = new SBMLReader(); SBMLDocument document = reader.readSBMLFromString(sbml); Model model = document.getModel(); Layout layout = model.createLayout(); \u3067\u3001   layout.delete(); \u3068\u304b\u66f8\u3044\u3066\u307f\u305f\u306e\u3060\u304c\u3001\u5168\u7136\u6d88\u3048\u306a\u3044&#8230;  (\u3053\u308c\u3063\u3066\u3001constructor \u3068\u304b destructor \u3068\u304b\u3088\u304f\u308f\u304b\u3063\u3066\u306a\u3044\u8a3c\u62e0\u306a\u6c17\u304c\u3057\u307e\u3059\u3002<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":4,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[8,4],"tags":[],"class_list":["post-1096","post","type-post","status-publish","format-standard","hentry","category-java","category-4"],"_links":{"self":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts\/1096","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/comments?post=1096"}],"version-history":[{"count":0,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/posts\/1096\/revisions"}],"wp:attachment":[{"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/media?parent=1096"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/categories?post=1096"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/yasu2.prosou.nu\/blog\/index.php\/wp-json\/wp\/v2\/tags?post=1096"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}